Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 AC022616.5-201ENST00000518796 181 ntBASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VCX3AQ9NNX9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 AC020763.4-201ENST00000623414 4170 ntBASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 DUX4L4-201ENST00000566884 1269 ntBASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 MIR6765-201ENST00000614092 87 ntBASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VCX3AQ9NNX9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 AC026471.6-201ENST00000622954 1905 ntBASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 AC005332.8-201ENST00000622750 2735 ntBASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
VCX3AQ9NNX9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCX3AQ9NNX9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCX3AQ9NNX9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 AF131216.4-201ENST00000638924 1588 ntBASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.2■□□□□ 0.66
VCX3AQ9NNX9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms