Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 AL358852.1-201ENST00000623174 1268 ntBASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 AC027702.1-201ENST00000563810 1770 ntBASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM56Q9BRZ2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 RARRES2P6-201ENST00000567333 442 ntBASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 AL121603.2-201ENST00000557373 2117 ntBASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM56Q9BRZ2 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 IRS3P-201ENST00000223076 1006 ntBASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRIM56Q9BRZ2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 AC079140.4-201ENST00000507448 529 ntBASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TRIM56Q9BRZ2 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.93■□□□□ 0.94
TRIM56Q9BRZ2 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 AC007225.1-201ENST00000566331 1836 ntBASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 AC026271.2-201ENST00000428091 497 ntBASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 KRT87P-202ENST00000534226 1464 ntBASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms