Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC34.7■■■■□ 3.15
IFT140Q96RY7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC34.7■■■■□ 3.14
IFT140Q96RY7 AC073508.3-201ENST00000619697 1419 ntBASIC34.7■■■■□ 3.14
IFT140Q96RY7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC34.69■■■■□ 3.14
IFT140Q96RY7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC34.69■■■■□ 3.14
IFT140Q96RY7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC34.69■■■■□ 3.14
IFT140Q96RY7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC34.69■■■■□ 3.14
IFT140Q96RY7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
IFT140Q96RY7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC34.68■■■■□ 3.14
IFT140Q96RY7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC34.68■■■■□ 3.14
IFT140Q96RY7 DUT-205ENST00000558813 769 ntTSL 2 BASIC34.68■■■■□ 3.14
IFT140Q96RY7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC34.68■■■■□ 3.14
IFT140Q96RY7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC34.68■■■■□ 3.14
IFT140Q96RY7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
IFT140Q96RY7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
IFT140Q96RY7 AC020928.2-201ENST00000588717 2197 ntBASIC34.67■■■■□ 3.14
IFT140Q96RY7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 AC079598.2-202ENST00000546624 1451 ntBASIC34.67■■■■□ 3.14
IFT140Q96RY7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
IFT140Q96RY7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC34.67■■■■□ 3.14
IFT140Q96RY7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 AL353807.1-201ENST00000427475 662 ntBASIC34.66■■■■□ 3.14
IFT140Q96RY7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC34.66■■■■□ 3.14
IFT140Q96RY7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC34.66■■■■□ 3.14
IFT140Q96RY7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC34.66■■■■□ 3.14
IFT140Q96RY7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC34.66■■■■□ 3.14
IFT140Q96RY7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
IFT140Q96RY7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC34.65■■■■□ 3.14
IFT140Q96RY7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC34.65■■■■□ 3.14
IFT140Q96RY7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC34.65■■■■□ 3.14
IFT140Q96RY7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC34.65■■■■□ 3.14
IFT140Q96RY7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
IFT140Q96RY7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC34.65■■■■□ 3.14
IFT140Q96RY7 NFE2L3P1-201ENST00000588207 1959 ntBASIC34.65■■■■□ 3.14
IFT140Q96RY7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
IFT140Q96RY7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
IFT140Q96RY7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC34.64■■■■□ 3.14
IFT140Q96RY7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC34.64■■■■□ 3.14
IFT140Q96RY7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC34.64■■■■□ 3.14
IFT140Q96RY7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC34.64■■■■□ 3.14
IFT140Q96RY7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
IFT140Q96RY7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC34.64■■■■□ 3.14
IFT140Q96RY7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
IFT140Q96RY7 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC34.64■■■■□ 3.14
IFT140Q96RY7 NUDT16P1-203ENST00000513809 620 ntBASIC34.64■■■■□ 3.14
IFT140Q96RY7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
IFT140Q96RY7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC34.63■■■■□ 3.13
IFT140Q96RY7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC34.63■■■■□ 3.13
IFT140Q96RY7 Six3os1_6.1-201ENST00000620790 196 ntBASIC34.63■■■■□ 3.13
IFT140Q96RY7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC34.63■■■■□ 3.13
IFT140Q96RY7 HTR7P1-201ENST00000538670 1336 ntBASIC34.63■■■■□ 3.13
IFT140Q96RY7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
IFT140Q96RY7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC34.62■■■■□ 3.13
IFT140Q96RY7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
IFT140Q96RY7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
IFT140Q96RY7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
IFT140Q96RY7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC34.62■■■■□ 3.13
IFT140Q96RY7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC34.62■■■■□ 3.13
IFT140Q96RY7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
IFT140Q96RY7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
IFT140Q96RY7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC34.61■■■■□ 3.13
IFT140Q96RY7 DUX4L26-201ENST00000489078 1255 ntBASIC34.61■■■■□ 3.13
IFT140Q96RY7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC34.61■■■■□ 3.13
IFT140Q96RY7 AP000525.1-201ENST00000608286 694 ntBASIC34.61■■■■□ 3.13
IFT140Q96RY7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC34.61■■■■□ 3.13
IFT140Q96RY7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC34.6■■■■□ 3.13
IFT140Q96RY7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
IFT140Q96RY7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
IFT140Q96RY7 FAM197Y1-201ENST00000421178 764 ntBASIC34.6■■■■□ 3.13
IFT140Q96RY7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
IFT140Q96RY7 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC34.59■■■■□ 3.13
IFT140Q96RY7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC34.59■■■■□ 3.13
IFT140Q96RY7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC34.59■■■■□ 3.13
IFT140Q96RY7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC34.59■■■■□ 3.13
IFT140Q96RY7 NTF6B-201ENST00000591913 560 ntBASIC34.59■■■■□ 3.13
IFT140Q96RY7 REXO1L10P-201ENST00000615707 1290 ntBASIC34.59■■■■□ 3.13
IFT140Q96RY7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
IFT140Q96RY7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC34.59■■■■□ 3.13
IFT140Q96RY7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 KRT16P5-201ENST00000455284 522 ntBASIC34.58■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms