Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
NEK1Q96PY6 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
NEK1Q96PY6 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
NEK1Q96PY6 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
NEK1Q96PY6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
NEK1Q96PY6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 AC010536.3-201ENST00000620306 533 ntBASIC24.41■■□□□ 1.5
NEK1Q96PY6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
NEK1Q96PY6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
NEK1Q96PY6 FP700111.2-201ENST00000619190 1892 ntBASIC24.41■■□□□ 1.5
NEK1Q96PY6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.4■■□□□ 1.5
NEK1Q96PY6 TERF1P5-201ENST00000477545 1207 ntBASIC24.4■■□□□ 1.5
NEK1Q96PY6 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
NEK1Q96PY6 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NEK1Q96PY6 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
NEK1Q96PY6 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.39■■□□□ 1.5
NEK1Q96PY6 AC027702.1-201ENST00000563810 1770 ntBASIC24.39■■□□□ 1.5
NEK1Q96PY6 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.39■■□□□ 1.5
NEK1Q96PY6 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.39■■□□□ 1.49
NEK1Q96PY6 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC24.39■■□□□ 1.49
NEK1Q96PY6 AC016769.1-201ENST00000409132 1010 ntBASIC24.39■■□□□ 1.49
NEK1Q96PY6 AC006015.1-201ENST00000429970 570 ntBASIC24.39■■□□□ 1.49
NEK1Q96PY6 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.39■■□□□ 1.49
NEK1Q96PY6 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.38■■□□□ 1.49
NEK1Q96PY6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NEK1Q96PY6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.37■■□□□ 1.49
NEK1Q96PY6 AC073314.1-201ENST00000568729 2216 ntBASIC24.37■■□□□ 1.49
NEK1Q96PY6 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NEK1Q96PY6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NEK1Q96PY6 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
NEK1Q96PY6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NEK1Q96PY6 LINC01006-201ENST00000333319 2292 ntBASIC24.36■■□□□ 1.49
NEK1Q96PY6 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NEK1Q96PY6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NEK1Q96PY6 AC007322.3-201ENST00000426526 701 ntBASIC24.36■■□□□ 1.49
NEK1Q96PY6 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NEK1Q96PY6 MFSD11-216ENST00000590393 1141 ntBASIC24.36■■□□□ 1.49
NEK1Q96PY6 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms