Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.972e-6■■■■□ 26.2
UPF1Q92900 TRIM41-208ENST00000515499 914 ntTSL 327.79■■■□□ 2.044e-6■■■■□ 26.2
UPF1Q92900 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.03■□□□□ 0.964e-6■■■■□ 26.2
UPF1Q92900 TRIM41-203ENST00000503114 1904 ntTSL 1 (best)19.7■□□□□ 0.744e-6■■■■□ 26.2
UPF1Q92900 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.88■□□□□ 0.294e-6■■■■□ 26.2
UPF1Q92900 TRIM41-207ENST00000515223 5707 ntTSL 216.05■□□□□ 0.164e-6■■■■□ 26.2
UPF1Q92900 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.024e-6■■■■□ 26.2
UPF1Q92900 TRIM41-204ENST00000508930 3834 ntTSL 1 (best)13.7□□□□□ -0.224e-6■■■■□ 26.2
UPF1Q92900 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC8.49□□□□□ -1.054e-6■■■■□ 26.2
UPF1Q92900 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC6.04□□□□□ -1.444e-6■■■■□ 26.2
UPF1Q92900 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -09e-10■■■■□ 26.2
UPF1Q92900 INPP5B-205ENST00000373027 3905 ntTSL 2 BASIC11.18□□□□□ -0.629e-10■■■■□ 26.2
UPF1Q92900 INPP5B-206ENST00000458109 3979 ntTSL 1 (best) BASIC10.73□□□□□ -0.699e-10■■■■□ 26.2
UPF1Q92900 TMEM59L-204ENST00000598660 1683 ntTSL 528.09■■■□□ 2.093e-7■■■■□ 26.2
UPF1Q92900 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.693e-7■■■■□ 26.2
UPF1Q92900 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.213e-7■■■■□ 26.2
UPF1Q92900 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC26.2■■□□□ 1.788e-8■■■■□ 26.2
UPF1Q92900 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.254e-9■■■■□ 26.2
UPF1Q92900 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.244e-9■■■■□ 26.2
UPF1Q92900 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.538e-8■■■■□ 26.2
UPF1Q92900 ARID3B-202ENST00000563567 520 ntTSL 316.83■□□□□ 0.288e-8■■■■□ 26.2
UPF1Q92900 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.038e-8■■■■□ 26.2
UPF1Q92900 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC15.13■□□□□ 0.018e-8■■■■□ 26.2
UPF1Q92900 ABHD4-202ENST00000418446 1003 ntTSL 214.91□□□□□ -0.027e-8■■■■□ 26.2
UPF1Q92900 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.098e-8■■■■□ 26.2
UPF1Q92900 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.968e-8■■■■□ 26.2
UPF1Q92900 MAF1-206ENST00000534811 632 ntTSL 221.78■■□□□ 1.081e-9■■■■□ 26.2
UPF1Q92900 TOLLIP-207ENST00000527886 3666 ntTSL 2 BASIC13.81□□□□□ -0.22e-7■■■■□ 26.2
UPF1Q92900 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.272e-7■■■■□ 26.2
UPF1Q92900 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.82□□□□□ -0.362e-7■■■■□ 26.2
UPF1Q92900 DPP9-207ENST00000597145 4257 ntTSL 213.04□□□□□ -0.322e-9■■■■□ 26.2
UPF1Q92900 C19orf54-204ENST00000594163 519 ntTSL 310.29□□□□□ -0.762e-7■■■■□ 26.2
UPF1Q92900 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.374e-7■■■■□ 26.2
UPF1Q92900 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.47■□□□□ 0.554e-7■■■■□ 26.2
UPF1Q92900 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.3■□□□□ 0.044e-7■■■■□ 26.2
UPF1Q92900 DBNDD1-207ENST00000623401 2889 nt14.44□□□□□ -0.14e-7■■■■□ 26.2
UPF1Q92900 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC34.11■■■■□ 3.053e-6■■■■□ 26.2
UPF1Q92900 TRIM14-206ENST00000478530 982 ntTSL 532.78■■■□□ 2.843e-6■■■■□ 26.2
UPF1Q92900 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.263e-6■■■■□ 26.2
UPF1Q92900 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.243e-6■■■■□ 26.2
UPF1Q92900 SMC4-221ENST00000489573 1553 ntTSL 1 (best)27.01■■□□□ 1.921e-11■■■■□ 26.2
UPF1Q92900 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.774e-6■■■■□ 26.2
UPF1Q92900 STOM-203ENST00000538954 1257 ntTSL 5 BASIC22.59■■□□□ 1.213e-8■■■■□ 26.2
UPF1Q92900 SMC4-209ENST00000468653 1756 ntTSL 222.41■■□□□ 1.181e-11■■■■□ 26.2
UPF1Q92900 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.033e-6■■■■□ 26.2
UPF1Q92900 SMC4-211ENST00000469858 1971 ntTSL 221.21■□□□□ 0.991e-11■■■■□ 26.2
UPF1Q92900 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.04■□□□□ 0.963e-6■■■■□ 26.2
UPF1Q92900 ANKRD11-209ENST00000564553 471 ntTSL 318.68■□□□□ 0.583e-6■■■■□ 26.2
UPF1Q92900 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.577e-7■■■■□ 26.2
UPF1Q92900 ANKRD11-207ENST00000562816 573 ntTSL 417.51■□□□□ 0.393e-6■■■■□ 26.2
UPF1Q92900 KIAA0930-206ENST00000423262 2218 ntTSL 217.26■□□□□ 0.351e-7■■■■□ 26.2
UPF1Q92900 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.143e-6■■■■□ 26.2
UPF1Q92900 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.83■□□□□ 0.121e-7■■■■□ 26.2
UPF1Q92900 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.123e-6■■■■□ 26.2
UPF1Q92900 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.61■□□□□ 0.093e-6■■■■□ 26.2
UPF1Q92900 ANKRD11-213ENST00000567736 2750 ntTSL 215.41■□□□□ 0.063e-6■■■■□ 26.2
UPF1Q92900 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.21■□□□□ 0.031e-11■■■■□ 26.2
UPF1Q92900 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.07■□□□□ 03e-6■■■■□ 26.2
UPF1Q92900 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.061e-6■■■■□ 26.2
UPF1Q92900 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC14.47□□□□□ -0.091e-7■■■■□ 26.2
UPF1Q92900 KIAA0930-212ENST00000488038 2639 ntTSL 1 (best)14.4□□□□□ -0.11e-7■■■■□ 26.2
UPF1Q92900 NOM1-207ENST00000486131 997 ntTSL 214.27□□□□□ -0.137e-7■■■■□ 26.2
UPF1Q92900 ANKS6-203ENST00000444472 2272 ntTSL 214.25□□□□□ -0.133e-6■■■■□ 26.2
UPF1Q92900 ABHD17B-201ENST00000333421 2614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.243e-6■■■■□ 26.2
UPF1Q92900 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.264e-6■■■■□ 26.2
UPF1Q92900 ANKS6-207ENST00000634393 2284 ntTSL 513.22□□□□□ -0.293e-6■■■■□ 26.2
UPF1Q92900 SMC4-213ENST00000472282 667 ntTSL 313.2□□□□□ -0.31e-11■■■■□ 26.2
UPF1Q92900 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.311e-6■■■■□ 26.2
UPF1Q92900 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC13.11□□□□□ -0.311e-6■■■■□ 26.2
UPF1Q92900 LRRC8B-202ENST00000358200 1957 ntTSL 5 BASIC13.06□□□□□ -0.323e-6■■■■□ 26.2
UPF1Q92900 SMC4-219ENST00000487747 637 ntTSL 513.02□□□□□ -0.331e-11■■■■□ 26.2
UPF1Q92900 SMC4-227ENST00000497984 563 ntTSL 512.49□□□□□ -0.411e-11■■■■□ 26.2
UPF1Q92900 SMC4-214ENST00000472991 582 ntTSL 512.1□□□□□ -0.471e-11■■■■□ 26.2
UPF1Q92900 IDH3A-201ENST00000299518 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.553e-6■■■■□ 26.2
UPF1Q92900 SMC4-212ENST00000470240 724 ntTSL 310.69□□□□□ -0.71e-11■■■■□ 26.2
UPF1Q92900 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC10.63□□□□□ -0.714e-6■■■■□ 26.2
UPF1Q92900 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.713e-6■■■■□ 26.2
UPF1Q92900 SMC4-208ENST00000467468 566 ntTSL 49.86□□□□□ -0.831e-11■■■■□ 26.2
UPF1Q92900 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC9.85□□□□□ -0.831e-11■■■■□ 26.2
UPF1Q92900 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC9.84□□□□□ -0.834e-6■■■■□ 26.2
UPF1Q92900 IDH3A-203ENST00000557960 424 ntTSL 39.71□□□□□ -0.863e-6■■■■□ 26.2
UPF1Q92900 UNC13B-211ENST00000637271 5335 ntTSL 59.69□□□□□ -0.861e-6■■■■□ 26.2
UPF1Q92900 AMOTL1-202ENST00000317829 8844 ntTSL 1 (best) BASIC9.55□□□□□ -0.883e-6■■■■□ 26.2
UPF1Q92900 KIAA0930-202ENST00000336156 8119 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.912e-7■■■■□ 26.2
UPF1Q92900 AMOTL1-203ENST00000433060 8970 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.933e-6■■■■□ 26.2
UPF1Q92900 CEP350-203ENST00000417046 2724 ntTSL 28.85□□□□□ -0.993e-6■■■■□ 26.2
UPF1Q92900 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -13e-6■■■■□ 26.2
UPF1Q92900 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.083e-8■■■■□ 26.2
UPF1Q92900 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.163e-6■■■■□ 26.2
UPF1Q92900 IDH3A-206ENST00000558535 2586 ntTSL 1 (best)7.74□□□□□ -1.173e-6■■■■□ 26.2
UPF1Q92900 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.01□□□□□ -1.291e-6■■■■□ 26.2
UPF1Q92900 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.311e-6■■■■□ 26.2
UPF1Q92900 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.343e-6■■■■□ 26.2
UPF1Q92900 LRRC8B-205ENST00000639264 7736 ntAPPRIS P1 TSL 56.08□□□□□ -1.443e-6■■■■□ 26.2
UPF1Q92900 CDKN2AIP-202ENST00000502924 347 ntTSL 35.99□□□□□ -1.453e-6■■■■□ 26.2
UPF1Q92900 CEP350-205ENST00000429851 6096 ntTSL 1 (best)5.96□□□□□ -1.463e-6■■■■□ 26.2
UPF1Q92900 MIR15B-201ENST00000385045 98 ntBASIC5.72□□□□□ -1.491e-11■■■■□ 26.2
UPF1Q92900 TGIF2-207ENST00000561398 797 ntTSL 317.44■□□□□ 0.383e-7■■■■□ 26.1
UPF1Q92900 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.35■■□□□ 1.012e-7■■■■□ 26.1
UPF1Q92900 SLC35A3-219ENST00000640178 2446 ntTSL 519.5■□□□□ 0.712e-7■■■■□ 26.1
Retrieved 100 of 15,879 protein–RNA pairs in 159 ms