Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
CLHC1Q8NHS4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 AC008175.2-201ENST00000612840 297 ntBASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLHC1Q8NHS4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLHC1Q8NHS4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 AC011484.1-201ENST00000377652 1995 ntBASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 MIR638-201ENST00000385237 100 ntBASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.72■□□□□ 0.75
CLHC1Q8NHS4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 AC020907.5-201ENST00000624372 1936 ntBASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 AC027612.3-201ENST00000413684 1047 ntBASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms