Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 AP003097.1-201ENST00000530657 1135 ntBASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 AC008550.1-201ENST00000511500 884 ntBASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 UNC93B5-201ENST00000530315 699 ntBASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 AC073648.6-201ENST00000641589 218 ntBASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.72■□□□□ 0.91
HDDC3Q8N4P3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CYP21A1P-202ENST00000354927 1481 ntBASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 UBE2SP1-201ENST00000450587 669 ntBASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HDDC3Q8N4P3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HDDC3Q8N4P3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
HDDC3Q8N4P3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDDC3Q8N4P3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 MIR718-201ENST00000390190 70 ntBASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms