Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13DQ5THJ4 MIR4785-201ENST00000585005 73 ntBASIC14.03□□□□□ -0.16
VPS13DQ5THJ4 C9orf163-202ENST00000624034 2573 ntBASIC14.03□□□□□ -0.16
VPS13DQ5THJ4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13DQ5THJ4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 CDV3P1-201ENST00000471403 739 ntBASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 AC005829.2-201ENST00000571422 1056 ntBASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13DQ5THJ4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 AC133681.1-201ENST00000465482 601 ntBASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13DQ5THJ4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AC127496.7-201ENST00000625110 1798 ntBASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13DQ5THJ4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 C1orf229-201ENST00000623686 2258 ntBASIC14□□□□□ -0.17
VPS13DQ5THJ4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 MCRIP2P1-201ENST00000394346 511 ntBASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC145285.6-201ENST00000604632 637 ntBASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13DQ5THJ4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
VPS13DQ5THJ4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 AC116050.2-201ENST00000612102 1779 ntBASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13DQ5THJ4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms