Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.48■□□□□ 0.87
LRRK1Q38SD2 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LRRK1Q38SD2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 UNC93B5-201ENST00000530315 699 ntBASIC20.46■□□□□ 0.87
LRRK1Q38SD2 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.46■□□□□ 0.87
LRRK1Q38SD2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LRRK1Q38SD2 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 CYP21A1P-202ENST00000354927 1481 ntBASIC20.44■□□□□ 0.86
LRRK1Q38SD2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 AC097658.1-201ENST00000475555 843 ntBASIC20.44■□□□□ 0.86
LRRK1Q38SD2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 CD99P1-205ENST00000527459 561 ntBASIC20.44■□□□□ 0.86
LRRK1Q38SD2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
LRRK1Q38SD2 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 AC079834.2-201ENST00000609776 1949 ntBASIC20.43■□□□□ 0.86
LRRK1Q38SD2 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRK1Q38SD2 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms