Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC12.08□□□□□ -0.48
RPS28P62857 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.08□□□□□ -0.48
RPS28P62857 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC12.08□□□□□ -0.48
RPS28P62857 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.08□□□□□ -0.48
RPS28P62857 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC12.08□□□□□ -0.48
RPS28P62857 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RPS28P62857 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.07□□□□□ -0.48
RPS28P62857 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC12.07□□□□□ -0.48
RPS28P62857 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
RPS28P62857 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
RPS28P62857 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
RPS28P62857 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
RPS28P62857 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.07□□□□□ -0.48
RPS28P62857 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC12.07□□□□□ -0.48
RPS28P62857 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC12.07□□□□□ -0.48
RPS28P62857 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
RPS28P62857 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RPS28P62857 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC12.07□□□□□ -0.48
RPS28P62857 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC12.06□□□□□ -0.48
RPS28P62857 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
RPS28P62857 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
RPS28P62857 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 AC092850.2-201ENST00000623821 2697 ntBASIC12.06□□□□□ -0.48
RPS28P62857 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC12.06□□□□□ -0.48
RPS28P62857 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC12.06□□□□□ -0.48
RPS28P62857 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC12.06□□□□□ -0.48
RPS28P62857 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RPS28P62857 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC12.06□□□□□ -0.48
RPS28P62857 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.05□□□□□ -0.48
RPS28P62857 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.05□□□□□ -0.48
RPS28P62857 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC12.05□□□□□ -0.48
RPS28P62857 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC12.05□□□□□ -0.48
RPS28P62857 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 AC125437.2-201ENST00000625180 2167 ntBASIC12.05□□□□□ -0.48
RPS28P62857 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.05□□□□□ -0.48
RPS28P62857 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
RPS28P62857 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC12.05□□□□□ -0.48
RPS28P62857 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RPS28P62857 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms