Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
MSH6P52701 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC28.85■■■□□ 2.21
MSH6P52701 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC28.85■■■□□ 2.21
MSH6P52701 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC28.85■■■□□ 2.21
MSH6P52701 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC28.85■■■□□ 2.21
MSH6P52701 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
MSH6P52701 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC28.84■■■□□ 2.21
MSH6P52701 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
MSH6P52701 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
MSH6P52701 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
MSH6P52701 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
MSH6P52701 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
MSH6P52701 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.84■■■□□ 2.21
MSH6P52701 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.84■■■□□ 2.21
MSH6P52701 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
MSH6P52701 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC28.83■■■□□ 2.21
MSH6P52701 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
MSH6P52701 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC28.83■■■□□ 2.21
MSH6P52701 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
MSH6P52701 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC28.83■■■□□ 2.21
MSH6P52701 AC006557.6-201ENST00000623071 864 ntBASIC28.83■■■□□ 2.21
MSH6P52701 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
MSH6P52701 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.82■■■□□ 2.2
MSH6P52701 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
MSH6P52701 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.82■■■□□ 2.2
MSH6P52701 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
MSH6P52701 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC28.82■■■□□ 2.2
MSH6P52701 SERP1-205ENST00000487153 657 ntTSL 4 BASIC28.82■■■□□ 2.2
MSH6P52701 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC28.82■■■□□ 2.2
MSH6P52701 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
MSH6P52701 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
MSH6P52701 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
MSH6P52701 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
MSH6P52701 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.81■■■□□ 2.2
MSH6P52701 AC113347.1-201ENST00000413321 391 ntBASIC28.81■■■□□ 2.2
MSH6P52701 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC28.81■■■□□ 2.2
MSH6P52701 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.81■■■□□ 2.2
MSH6P52701 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC28.81■■■□□ 2.2
MSH6P52701 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
MSH6P52701 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
MSH6P52701 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH6P52701 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC28.8■■■□□ 2.2
MSH6P52701 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH6P52701 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH6P52701 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC28.8■■■□□ 2.2
MSH6P52701 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
MSH6P52701 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH6P52701 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
MSH6P52701 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH6P52701 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
MSH6P52701 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.79■■■□□ 2.2
MSH6P52701 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC28.79■■■□□ 2.2
MSH6P52701 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC28.79■■■□□ 2.2
MSH6P52701 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC28.79■■■□□ 2.2
MSH6P52701 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC28.79■■■□□ 2.2
MSH6P52701 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC28.79■■■□□ 2.2
MSH6P52701 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC28.79■■■□□ 2.2
MSH6P52701 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 C11orf96-202ENST00000528572 1834 ntBASIC28.79■■■□□ 2.2
MSH6P52701 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.79■■■□□ 2.2
MSH6P52701 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH6P52701 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC28.78■■■□□ 2.2
MSH6P52701 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC28.78■■■□□ 2.2
MSH6P52701 KRT18P57-201ENST00000443599 1254 ntBASIC28.78■■■□□ 2.2
MSH6P52701 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC28.78■■■□□ 2.2
MSH6P52701 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC28.78■■■□□ 2.2
MSH6P52701 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC28.78■■■□□ 2.2
MSH6P52701 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
MSH6P52701 AF186192.3-201ENST00000583427 947 ntBASIC28.78■■■□□ 2.2
MSH6P52701 RPS15-203ENST00000586096 570 ntTSL 2 BASIC28.78■■■□□ 2.2
MSH6P52701 AC139530.1-201ENST00000575312 1977 ntBASIC28.78■■■□□ 2.2
MSH6P52701 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC28.78■■■□□ 2.2
MSH6P52701 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC28.78■■■□□ 2.2
MSH6P52701 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC28.78■■■□□ 2.2
MSH6P52701 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC28.78■■■□□ 2.2
MSH6P52701 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC28.78■■■□□ 2.2
MSH6P52701 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC28.77■■■□□ 2.2
MSH6P52701 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC28.77■■■□□ 2.2
MSH6P52701 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC28.77■■■□□ 2.2
MSH6P52701 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC28.77■■■□□ 2.2
MSH6P52701 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC28.77■■■□□ 2.2
MSH6P52701 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
MSH6P52701 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
MSH6P52701 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
MSH6P52701 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 AC087742.1-201ENST00000575880 1738 ntBASIC28.77■■■□□ 2.2
MSH6P52701 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH6P52701 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.2
MSH6P52701 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
MSH6P52701 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms