Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.51■□□□□ 0.87
MSH3P20585 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH3P20585 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MSH3P20585 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
MSH3P20585 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
MSH3P20585 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MSH3P20585 AC007322.4-201ENST00000509611 723 ntBASIC20.5■□□□□ 0.87
MSH3P20585 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH3P20585 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH3P20585 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
MSH3P20585 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
MSH3P20585 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
MSH3P20585 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH3P20585 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH3P20585 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.49■□□□□ 0.87
MSH3P20585 AC091799.1-201ENST00000422823 811 ntBASIC20.49■□□□□ 0.87
MSH3P20585 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH3P20585 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 CDCA4P2-201ENST00000441182 718 ntBASIC20.49■□□□□ 0.87
MSH3P20585 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH3P20585 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.49■□□□□ 0.87
MSH3P20585 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MSH3P20585 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
MSH3P20585 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MSH3P20585 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
MSH3P20585 CNN2P6-201ENST00000439038 900 ntBASIC20.48■□□□□ 0.87
MSH3P20585 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.48■□□□□ 0.87
MSH3P20585 AL591742.1-201ENST00000604433 565 ntBASIC20.48■□□□□ 0.87
MSH3P20585 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.48■□□□□ 0.87
MSH3P20585 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MSH3P20585 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.48■□□□□ 0.87
MSH3P20585 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH3P20585 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
MSH3P20585 AC026185.1-201ENST00000445748 174 ntBASIC20.47■□□□□ 0.87
MSH3P20585 CDV3P1-201ENST00000471403 739 ntBASIC20.47■□□□□ 0.87
MSH3P20585 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH3P20585 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH3P20585 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.47■□□□□ 0.87
MSH3P20585 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH3P20585 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH3P20585 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH3P20585 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH3P20585 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.47■□□□□ 0.87
MSH3P20585 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH3P20585 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH3P20585 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
MSH3P20585 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH3P20585 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH3P20585 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MSH3P20585 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH3P20585 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH3P20585 AC116050.2-201ENST00000612102 1779 ntBASIC20.46■□□□□ 0.87
MSH3P20585 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH3P20585 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH3P20585 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH3P20585 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 AC005181.1-201ENST00000604782 1256 ntBASIC20.45■□□□□ 0.86
MSH3P20585 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
MSH3P20585 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.45■□□□□ 0.86
MSH3P20585 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.45■□□□□ 0.86
MSH3P20585 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH3P20585 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH3P20585 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH3P20585 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms