Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DQA1P01909 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 AC120024.1-201ENST00000562672 995 ntBASIC15.49■□□□□ 0.07
HLA-DQA1P01909 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 PALM-207ENST00000590161 2137 ntTSL 4 BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DQA1P01909 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 MIR4508-201ENST00000584178 70 ntBASIC15.48■□□□□ 0.07
HLA-DQA1P01909 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DQA1P01909 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 EI24-211ENST00000534546 1544 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DQA1P01909 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DQA1P01909 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HLA-DQA1P01909 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DQA1P01909 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DQA1P01909 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DQA1P01909 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms