Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 RBM17P2-201ENST00000616397 1405 ntBASIC19.71■□□□□ 0.75
SEMA3DO95025 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.71■□□□□ 0.75
SEMA3DO95025 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SEMA3DO95025 RARRES2P6-201ENST00000567333 442 ntBASIC19.71■□□□□ 0.75
SEMA3DO95025 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.71■□□□□ 0.75
SEMA3DO95025 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SEMA3DO95025 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.71■□□□□ 0.75
SEMA3DO95025 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEMA3DO95025 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.7■□□□□ 0.74
SEMA3DO95025 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SEMA3DO95025 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.7■□□□□ 0.74
SEMA3DO95025 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SEMA3DO95025 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.7■□□□□ 0.74
SEMA3DO95025 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.7■□□□□ 0.74
SEMA3DO95025 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.7■□□□□ 0.74
SEMA3DO95025 MYCNOS-205ENST00000641950 531 ntBASIC19.7■□□□□ 0.74
SEMA3DO95025 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SEMA3DO95025 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.7■□□□□ 0.74
SEMA3DO95025 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEMA3DO95025 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SEMA3DO95025 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.69■□□□□ 0.74
SEMA3DO95025 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SEMA3DO95025 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.69■□□□□ 0.74
SEMA3DO95025 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.69■□□□□ 0.74
SEMA3DO95025 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.69■□□□□ 0.74
SEMA3DO95025 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.69■□□□□ 0.74
SEMA3DO95025 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 UBE2DNL-204ENST00000602536 740 ntBASIC19.69■□□□□ 0.74
SEMA3DO95025 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEMA3DO95025 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SEMA3DO95025 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.68■□□□□ 0.74
SEMA3DO95025 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 KRT18P11-201ENST00000435214 1283 ntBASIC19.68■□□□□ 0.74
SEMA3DO95025 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.68■□□□□ 0.74
SEMA3DO95025 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.68■□□□□ 0.74
SEMA3DO95025 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
SEMA3DO95025 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SEMA3DO95025 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEMA3DO95025 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.67■□□□□ 0.74
SEMA3DO95025 AC116050.2-201ENST00000612102 1779 ntBASIC19.67■□□□□ 0.74
SEMA3DO95025 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SEMA3DO95025 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
SEMA3DO95025 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms