Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LDB3O75112 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 AC026185.1-201ENST00000445748 174 ntBASIC19.41■□□□□ 0.7
LDB3O75112 RAP2CP1-201ENST00000605103 478 ntBASIC19.41■□□□□ 0.7
LDB3O75112 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LDB3O75112 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
LDB3O75112 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LDB3O75112 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.4■□□□□ 0.7
LDB3O75112 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LDB3O75112 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.4■□□□□ 0.7
LDB3O75112 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.4■□□□□ 0.7
LDB3O75112 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.4■□□□□ 0.7
LDB3O75112 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LDB3O75112 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.4■□□□□ 0.7
LDB3O75112 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 AC011484.1-201ENST00000377652 1995 ntBASIC19.4■□□□□ 0.7
LDB3O75112 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDB3O75112 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.39■□□□□ 0.7
LDB3O75112 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.39■□□□□ 0.69
LDB3O75112 AC007322.3-201ENST00000426526 701 ntBASIC19.39■□□□□ 0.69
LDB3O75112 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 CDV3P1-201ENST00000471403 739 ntBASIC19.39■□□□□ 0.69
LDB3O75112 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 AC016405.3-201ENST00000607710 860 ntBASIC19.39■□□□□ 0.69
LDB3O75112 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LDB3O75112 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB3O75112 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB3O75112 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDB3O75112 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.38■□□□□ 0.69
LDB3O75112 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
LDB3O75112 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.38■□□□□ 0.69
LDB3O75112 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB3O75112 AC005181.1-201ENST00000604782 1256 ntBASIC19.38■□□□□ 0.69
LDB3O75112 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.38■□□□□ 0.69
LDB3O75112 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
LDB3O75112 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB3O75112 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
LDB3O75112 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
LDB3O75112 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
LDB3O75112 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 MIR663A-201ENST00000385250 93 ntBASIC19.37■□□□□ 0.69
LDB3O75112 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.37■□□□□ 0.69
LDB3O75112 CYP2T1P-201ENST00000432607 1285 ntBASIC19.37■□□□□ 0.69
LDB3O75112 CROCCP5-201ENST00000436658 830 ntBASIC19.37■□□□□ 0.69
LDB3O75112 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms