Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.71■□□□□ 0.91
SHOX2O60902 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SHOX2O60902 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
SHOX2O60902 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.71■□□□□ 0.91
SHOX2O60902 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 TSPY13P-201ENST00000338964 914 ntBASIC20.71■□□□□ 0.91
SHOX2O60902 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SHOX2O60902 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHOX2O60902 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.7■□□□□ 0.91
SHOX2O60902 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.7■□□□□ 0.9
SHOX2O60902 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 AL034346.1-201ENST00000568244 1277 ntBASIC20.7■□□□□ 0.9
SHOX2O60902 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SHOX2O60902 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SHOX2O60902 AC009102.2-201ENST00000606772 1639 ntBASIC20.7■□□□□ 0.9
SHOX2O60902 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.7■□□□□ 0.9
SHOX2O60902 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHOX2O60902 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.69■□□□□ 0.9
SHOX2O60902 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SHOX2O60902 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHOX2O60902 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.69■□□□□ 0.9
SHOX2O60902 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.68■□□□□ 0.9
SHOX2O60902 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.68■□□□□ 0.9
SHOX2O60902 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SHOX2O60902 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 AL049812.1-201ENST00000432563 2267 ntBASIC20.68■□□□□ 0.9
SHOX2O60902 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SHOX2O60902 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.68■□□□□ 0.9
SHOX2O60902 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHOX2O60902 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.68■□□□□ 0.9
SHOX2O60902 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.68■□□□□ 0.9
SHOX2O60902 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.67■□□□□ 0.9
SHOX2O60902 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 AC007613.1-201ENST00000572811 2597 ntBASIC20.67■□□□□ 0.9
SHOX2O60902 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SHOX2O60902 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.67■□□□□ 0.9
SHOX2O60902 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SHOX2O60902 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
SHOX2O60902 AC074183.2-201ENST00000623112 922 ntBASIC20.67■□□□□ 0.9
SHOX2O60902 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.67■□□□□ 0.9
SHOX2O60902 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.67■□□□□ 0.9
SHOX2O60902 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHOX2O60902 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.67■□□□□ 0.9
SHOX2O60902 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SHOX2O60902 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms