Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 AL162412.1-201ENST00000567129 965 ntBASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NPIPA2E9PIF3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 RARRES2P4-201ENST00000514074 484 ntBASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 RNA5SP413-201ENST00000516373 109 ntBASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPIPA2E9PIF3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 AC010980.2-201ENST00000587099 1412 ntBASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 FAM201B-201ENST00000458407 597 ntBASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 AC092118.2-201ENST00000613495 667 ntBASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPIPA2E9PIF3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NPIPA2E9PIF3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.77■□□□□ 0.59
NPIPA2E9PIF3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 AC245052.3-201ENST00000450182 901 ntBASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPIPA2E9PIF3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms