Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TCRBV7S3A2A0A539 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 MIR638-201ENST00000385237 100 ntBASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 SLC7A5P2-201ENST00000553010 536 ntBASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV7S3A2A0A539 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.97■□□□□ 0.95
TCRBV7S3A2A0A539 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 AC010141.2-201ENST00000452426 721 ntBASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 AC104187.1-201ENST00000607510 612 ntBASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TCRBV7S3A2A0A539 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 KRT16P2-201ENST00000414673 1423 ntBASIC20.95■□□□□ 0.94
TCRBV7S3A2A0A539 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms