Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AL136116.3-201ENST00000402907 1138 ntBASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CHMP1AQ9HD42 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CHMP1AQ9HD42 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CHMP1AQ9HD42 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP1AQ9HD42 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 AC126544.1-201ENST00000580842 1059 ntBASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHMP1AQ9HD42 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 BX842568.3-201ENST00000418104 571 ntBASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms