Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 AC012618.2-201ENST00000428058 849 ntBASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.22■■□□□ 1.15
RC3H2Q9HBD1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 AC233702.5-201ENST00000584107 538 ntBASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 MTDHP1-201ENST00000605323 784 ntBASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RC3H2Q9HBD1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 AC116050.2-201ENST00000612102 1779 ntBASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 C2orf69P4-201ENST00000565394 541 ntBASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H2Q9HBD1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 C1orf229-201ENST00000623686 2258 ntBASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 AC087633.2-202ENST00000565166 1439 ntBASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H2Q9HBD1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 AC211429.1-201ENST00000415277 523 ntBASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 AC133681.1-201ENST00000465482 601 ntBASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H2Q9HBD1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 AC124016.1-201ENST00000609552 612 ntBASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H2Q9HBD1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.16■■□□□ 1.14
RC3H2Q9HBD1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H2Q9HBD1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms