Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL589743.5-201ENST00000616611 1050 ntBASIC24.28■■□□□ 1.48
SHROOM1Q2M3G4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM1Q2M3G4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
SHROOM1Q2M3G4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM1Q2M3G4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM1Q2M3G4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.27■■□□□ 1.48
SHROOM1Q2M3G4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 SLC29A4P2-201ENST00000504749 1089 ntBASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 AC060766.5-201ENST00000590539 871 ntBASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
SHROOM1Q2M3G4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
SHROOM1Q2M3G4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 PNMA6B-201ENST00000538162 1200 ntBASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 AC142381.4-202ENST00000563973 229 ntBASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 HLA-B-256ENST00000639848 1089 ntBASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 EP400NL-214ENST00000641289 2402 ntBASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM1Q2M3G4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 AC116050.2-201ENST00000612102 1779 ntBASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.23■■□□□ 1.47
SHROOM1Q2M3G4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM1Q2M3G4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SHROOM1Q2M3G4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.21■■□□□ 1.47
SHROOM1Q2M3G4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SHROOM1Q2M3G4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
SHROOM1Q2M3G4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC24.21■■□□□ 1.47
SHROOM1Q2M3G4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms