Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 AC027702.1-201ENST00000563810 1770 ntBASIC19.24■□□□□ 0.67
CDH12P55289 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH12P55289 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH12P55289 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH12P55289 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH12P55289 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH12P55289 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH12P55289 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.23■□□□□ 0.67
CDH12P55289 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CDH12P55289 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.22■□□□□ 0.67
CDH12P55289 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 SUDS3P1-201ENST00000505831 966 ntBASIC19.22■□□□□ 0.67
CDH12P55289 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH12P55289 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CDH12P55289 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH12P55289 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.22■□□□□ 0.67
CDH12P55289 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.22■□□□□ 0.67
CDH12P55289 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH12P55289 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH12P55289 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH12P55289 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CDH12P55289 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CDH12P55289 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CDH12P55289 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.21■□□□□ 0.67
CDH12P55289 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.21■□□□□ 0.67
CDH12P55289 AL139246.5-201ENST00000606645 996 ntBASIC19.21■□□□□ 0.67
CDH12P55289 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH12P55289 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH12P55289 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH12P55289 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH12P55289 AC007225.1-201ENST00000566331 1836 ntBASIC19.21■□□□□ 0.67
CDH12P55289 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CDH12P55289 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH12P55289 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.2■□□□□ 0.66
CDH12P55289 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
CDH12P55289 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CDH12P55289 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH12P55289 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CDH12P55289 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CDH12P55289 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CDH12P55289 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH12P55289 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.19■□□□□ 0.66
CDH12P55289 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH12P55289 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CDH12P55289 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.19■□□□□ 0.66
CDH12P55289 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
CDH12P55289 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH12P55289 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH12P55289 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CDH12P55289 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH12P55289 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms