Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CHRNA4P43681 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.88■□□□□ 0.93
CHRNA4P43681 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHRNA4P43681 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
CHRNA4P43681 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.87■□□□□ 0.93
CHRNA4P43681 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CHRNA4P43681 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CHRNA4P43681 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHRNA4P43681 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHRNA4P43681 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHRNA4P43681 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.87■□□□□ 0.93
CHRNA4P43681 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHRNA4P43681 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CHRNA4P43681 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.86■□□□□ 0.93
CHRNA4P43681 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.86■□□□□ 0.93
CHRNA4P43681 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CHRNA4P43681 AC016769.1-201ENST00000409132 1010 ntBASIC20.86■□□□□ 0.93
CHRNA4P43681 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.86■□□□□ 0.93
CHRNA4P43681 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.86■□□□□ 0.93
CHRNA4P43681 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CHRNA4P43681 AC022517.1-201ENST00000592429 346 ntBASIC20.86■□□□□ 0.93
CHRNA4P43681 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.86■□□□□ 0.93
CHRNA4P43681 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CHRNA4P43681 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHRNA4P43681 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.85■□□□□ 0.93
CHRNA4P43681 AC011484.1-201ENST00000377652 1995 ntBASIC20.85■□□□□ 0.93
CHRNA4P43681 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.85■□□□□ 0.93
CHRNA4P43681 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHRNA4P43681 AC091799.1-201ENST00000422823 811 ntBASIC20.85■□□□□ 0.93
CHRNA4P43681 AC006015.1-201ENST00000429970 570 ntBASIC20.85■□□□□ 0.93
CHRNA4P43681 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.85■□□□□ 0.93
CHRNA4P43681 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CHRNA4P43681 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.85■□□□□ 0.93
CHRNA4P43681 MFSD11-216ENST00000590393 1141 ntBASIC20.85■□□□□ 0.93
CHRNA4P43681 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.85■□□□□ 0.93
CHRNA4P43681 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHRNA4P43681 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHRNA4P43681 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHRNA4P43681 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHRNA4P43681 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.84■□□□□ 0.93
CHRNA4P43681 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.84■□□□□ 0.93
CHRNA4P43681 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.84■□□□□ 0.93
CHRNA4P43681 AC243732.1-201ENST00000612648 864 ntBASIC20.84■□□□□ 0.93
CHRNA4P43681 AC011767.1-201ENST00000617410 1153 ntBASIC20.84■□□□□ 0.93
CHRNA4P43681 AC010536.3-201ENST00000620306 533 ntBASIC20.84■□□□□ 0.93
CHRNA4P43681 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.84■□□□□ 0.93
CHRNA4P43681 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CHRNA4P43681 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.84■□□□□ 0.93
CHRNA4P43681 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.84■□□□□ 0.93
CHRNA4P43681 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHRNA4P43681 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CHRNA4P43681 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CHRNA4P43681 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
CHRNA4P43681 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
CHRNA4P43681 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.83■□□□□ 0.93
CHRNA4P43681 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.83■□□□□ 0.93
CHRNA4P43681 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CHRNA4P43681 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
CHRNA4P43681 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CHRNA4P43681 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CHRNA4P43681 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.83■□□□□ 0.92
CHRNA4P43681 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.83■□□□□ 0.92
CHRNA4P43681 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.83■□□□□ 0.92
CHRNA4P43681 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CHRNA4P43681 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CHRNA4P43681 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.83■□□□□ 0.92
CHRNA4P43681 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHRNA4P43681 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CHRNA4P43681 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHRNA4P43681 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHRNA4P43681 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.82■□□□□ 0.92
CHRNA4P43681 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHRNA4P43681 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
CHRNA4P43681 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHRNA4P43681 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms