Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMARCA1P28370 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
SMARCA1P28370 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SMARCA1P28370 HLA-L-209ENST00000420110 1011 ntBASIC23.83■■□□□ 1.41
SMARCA1P28370 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.83■■□□□ 1.41
SMARCA1P28370 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.83■■□□□ 1.41
SMARCA1P28370 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.83■■□□□ 1.41
SMARCA1P28370 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.83■■□□□ 1.41
SMARCA1P28370 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.83■■□□□ 1.41
SMARCA1P28370 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.83■■□□□ 1.41
SMARCA1P28370 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.83■■□□□ 1.4
SMARCA1P28370 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.83■■□□□ 1.4
SMARCA1P28370 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SMARCA1P28370 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SMARCA1P28370 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SMARCA1P28370 MCRIP2P1-201ENST00000394346 511 ntBASIC23.82■■□□□ 1.4
SMARCA1P28370 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SMARCA1P28370 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
SMARCA1P28370 AC142086.2-201ENST00000569753 217 ntBASIC23.82■■□□□ 1.4
SMARCA1P28370 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.82■■□□□ 1.4
SMARCA1P28370 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SMARCA1P28370 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.82■■□□□ 1.4
SMARCA1P28370 MKRN4P-201ENST00000444706 1521 ntBASIC23.82■■□□□ 1.4
SMARCA1P28370 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.82■■□□□ 1.4
SMARCA1P28370 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
SMARCA1P28370 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMARCA1P28370 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
SMARCA1P28370 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMARCA1P28370 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.81■■□□□ 1.4
SMARCA1P28370 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.81■■□□□ 1.4
SMARCA1P28370 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.81■■□□□ 1.4
SMARCA1P28370 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SMARCA1P28370 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMARCA1P28370 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.81■■□□□ 1.4
SMARCA1P28370 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMARCA1P28370 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMARCA1P28370 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
SMARCA1P28370 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SMARCA1P28370 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
SMARCA1P28370 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.8■■□□□ 1.4
SMARCA1P28370 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.8■■□□□ 1.4
SMARCA1P28370 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.8■■□□□ 1.4
SMARCA1P28370 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.8■■□□□ 1.4
SMARCA1P28370 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SMARCA1P28370 CYP21A1P-202ENST00000354927 1481 ntBASIC23.8■■□□□ 1.4
SMARCA1P28370 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMARCA1P28370 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.8■■□□□ 1.4
SMARCA1P28370 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SMARCA1P28370 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SMARCA1P28370 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.79■■□□□ 1.4
SMARCA1P28370 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 AF106564.1-201ENST00000607058 2553 ntBASIC23.79■■□□□ 1.4
SMARCA1P28370 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.79■■□□□ 1.4
SMARCA1P28370 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 AC027702.1-201ENST00000563810 1770 ntBASIC23.79■■□□□ 1.4
SMARCA1P28370 SLC29A4P1-201ENST00000398760 971 ntBASIC23.79■■□□□ 1.4
SMARCA1P28370 AC073210.2-201ENST00000430369 194 ntBASIC23.79■■□□□ 1.4
SMARCA1P28370 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.79■■□□□ 1.4
SMARCA1P28370 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.79■■□□□ 1.4
SMARCA1P28370 CYP2T3P-201ENST00000601990 817 ntBASIC23.79■■□□□ 1.4
SMARCA1P28370 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
SMARCA1P28370 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.79■■□□□ 1.4
SMARCA1P28370 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMARCA1P28370 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SMARCA1P28370 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMARCA1P28370 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.78■■□□□ 1.4
SMARCA1P28370 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.78■■□□□ 1.4
SMARCA1P28370 MIPEPP3-201ENST00000412105 444 ntBASIC23.78■■□□□ 1.4
SMARCA1P28370 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.78■■□□□ 1.4
SMARCA1P28370 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.78■■□□□ 1.4
SMARCA1P28370 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.78■■□□□ 1.4
SMARCA1P28370 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.78■■□□□ 1.4
SMARCA1P28370 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMARCA1P28370 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMARCA1P28370 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.78■■□□□ 1.4
SMARCA1P28370 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms