Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
MSX1P28360 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.93■□□□□ 0.62
MSX1P28360 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.93■□□□□ 0.62
MSX1P28360 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX1P28360 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX1P28360 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 SLC29A4P1-201ENST00000398760 971 ntBASIC18.92■□□□□ 0.62
MSX1P28360 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 TSPY20P-201ENST00000450910 630 ntBASIC18.92■□□□□ 0.62
MSX1P28360 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX1P28360 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.92■□□□□ 0.62
MSX1P28360 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 AC013268.1-206ENST00000638368 961 ntBASIC18.92■□□□□ 0.62
MSX1P28360 AC112229.1-201ENST00000639295 961 ntBASIC18.92■□□□□ 0.62
MSX1P28360 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX1P28360 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
MSX1P28360 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
MSX1P28360 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.91■□□□□ 0.62
MSX1P28360 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.91■□□□□ 0.62
MSX1P28360 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.91■□□□□ 0.62
MSX1P28360 AC007322.4-201ENST00000509611 723 ntBASIC18.91■□□□□ 0.62
MSX1P28360 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
MSX1P28360 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.91■□□□□ 0.62
MSX1P28360 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MSX1P28360 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
MSX1P28360 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.91■□□□□ 0.62
MSX1P28360 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.91■□□□□ 0.62
MSX1P28360 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX1P28360 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.9■□□□□ 0.62
MSX1P28360 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.9■□□□□ 0.62
MSX1P28360 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.9■□□□□ 0.62
MSX1P28360 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX1P28360 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
MSX1P28360 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSX1P28360 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
MSX1P28360 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
MSX1P28360 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
MSX1P28360 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.89■□□□□ 0.61
MSX1P28360 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.89■□□□□ 0.61
MSX1P28360 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.89■□□□□ 0.61
MSX1P28360 AL138781.1-201ENST00000566567 1274 ntBASIC18.89■□□□□ 0.61
MSX1P28360 AL162412.1-201ENST00000567129 965 ntBASIC18.89■□□□□ 0.61
MSX1P28360 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
MSX1P28360 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
MSX1P28360 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.89■□□□□ 0.61
MSX1P28360 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX1P28360 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX1P28360 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms