Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC22.7■■□□□ 1.22
TPM1P09493 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
TPM1P09493 AC007225.1-201ENST00000566331 1836 ntBASIC22.7■■□□□ 1.22
TPM1P09493 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TPM1P09493 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
TPM1P09493 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
TPM1P09493 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
TPM1P09493 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.69■■□□□ 1.22
TPM1P09493 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.69■■□□□ 1.22
TPM1P09493 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
TPM1P09493 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.69■■□□□ 1.22
TPM1P09493 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.69■■□□□ 1.22
TPM1P09493 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC22.69■■□□□ 1.22
TPM1P09493 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.69■■□□□ 1.22
TPM1P09493 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.69■■□□□ 1.22
TPM1P09493 AL391422.3-201ENST00000603791 2761 ntBASIC22.69■■□□□ 1.22
TPM1P09493 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
TPM1P09493 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.69■■□□□ 1.22
TPM1P09493 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TPM1P09493 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
TPM1P09493 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.68■■□□□ 1.22
TPM1P09493 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
TPM1P09493 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.68■■□□□ 1.22
TPM1P09493 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
TPM1P09493 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
TPM1P09493 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.68■■□□□ 1.22
TPM1P09493 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
TPM1P09493 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.67■■□□□ 1.22
TPM1P09493 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
TPM1P09493 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
TPM1P09493 AC020907.5-201ENST00000624372 1936 ntBASIC22.67■■□□□ 1.22
TPM1P09493 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.67■■□□□ 1.22
TPM1P09493 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
TPM1P09493 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC22.67■■□□□ 1.22
TPM1P09493 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 FXN-202ENST00000396364 980 ntTSL 5 BASIC22.67■■□□□ 1.22
TPM1P09493 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.67■■□□□ 1.22
TPM1P09493 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
TPM1P09493 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.67■■□□□ 1.22
TPM1P09493 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 AC027702.1-201ENST00000563810 1770 ntBASIC22.67■■□□□ 1.22
TPM1P09493 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
TPM1P09493 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
TPM1P09493 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
TPM1P09493 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TPM1P09493 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.66■■□□□ 1.22
TPM1P09493 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.66■■□□□ 1.22
TPM1P09493 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.66■■□□□ 1.22
TPM1P09493 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.66■■□□□ 1.22
TPM1P09493 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 MIR4466-201ENST00000606121 54 ntBASIC22.66■■□□□ 1.22
TPM1P09493 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.66■■□□□ 1.22
TPM1P09493 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC22.66■■□□□ 1.22
TPM1P09493 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TPM1P09493 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms