Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SNX3O60493 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SNX3O60493 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.38■□□□□ 0.85
SNX3O60493 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.38■□□□□ 0.85
SNX3O60493 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 AC004987.1-201ENST00000428627 508 ntBASIC20.38■□□□□ 0.85
SNX3O60493 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.38■□□□□ 0.85
SNX3O60493 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.38■□□□□ 0.85
SNX3O60493 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SNX3O60493 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNX3O60493 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.38■□□□□ 0.85
SNX3O60493 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SNX3O60493 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.37■□□□□ 0.85
SNX3O60493 AC241377.3-202ENST00000626088 1088 ntBASIC20.37■□□□□ 0.85
SNX3O60493 AC241585.3-202ENST00000628937 1088 ntBASIC20.37■□□□□ 0.85
SNX3O60493 AC245100.8-202ENST00000629247 1058 ntBASIC20.37■□□□□ 0.85
SNX3O60493 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
SNX3O60493 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SNX3O60493 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SNX3O60493 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SNX3O60493 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SNX3O60493 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SNX3O60493 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.36■□□□□ 0.85
SNX3O60493 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.36■□□□□ 0.85
SNX3O60493 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.36■□□□□ 0.85
SNX3O60493 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 pRNA.6-201ENST00000610482 90 ntBASIC20.36■□□□□ 0.85
SNX3O60493 pRNA.5-201ENST00000612139 90 ntBASIC20.36■□□□□ 0.85
SNX3O60493 pRNA.11-201ENST00000618423 90 ntBASIC20.36■□□□□ 0.85
SNX3O60493 pRNA.13-201ENST00000619112 90 ntBASIC20.36■□□□□ 0.85
SNX3O60493 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.36■□□□□ 0.85
SNX3O60493 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SNX3O60493 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.36■□□□□ 0.85
SNX3O60493 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNX3O60493 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.35■□□□□ 0.85
SNX3O60493 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.35■□□□□ 0.85
SNX3O60493 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.35■□□□□ 0.85
SNX3O60493 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.35■□□□□ 0.85
SNX3O60493 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SNX3O60493 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNX3O60493 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SNX3O60493 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.34■□□□□ 0.85
SNX3O60493 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
SNX3O60493 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.34■□□□□ 0.85
SNX3O60493 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.34■□□□□ 0.85
SNX3O60493 OR2I1P-207ENST00000453522 948 ntBASIC20.34■□□□□ 0.85
SNX3O60493 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SNX3O60493 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 AC005332.7-201ENST00000614046 2005 ntBASIC20.34■□□□□ 0.85
SNX3O60493 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SNX3O60493 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SNX3O60493 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SNX3O60493 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNX3O60493 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.33■□□□□ 0.85
SNX3O60493 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.33■□□□□ 0.85
SNX3O60493 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.33■□□□□ 0.85
SNX3O60493 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SNX3O60493 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SNX3O60493 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms