Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.15■□□□□ 0.82
CDX4O14627 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX4O14627 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.15■□□□□ 0.82
CDX4O14627 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CDX4O14627 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX4O14627 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.14■□□□□ 0.81
CDX4O14627 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX4O14627 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX4O14627 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX4O14627 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX4O14627 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.14■□□□□ 0.81
CDX4O14627 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX4O14627 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.13■□□□□ 0.81
CDX4O14627 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CDX4O14627 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.13■□□□□ 0.81
CDX4O14627 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.13■□□□□ 0.81
CDX4O14627 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.13■□□□□ 0.81
CDX4O14627 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX4O14627 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CDX4O14627 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CDX4O14627 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 ARMC10P1-201ENST00000313754 855 ntBASIC20.12■□□□□ 0.81
CDX4O14627 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.12■□□□□ 0.81
CDX4O14627 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CDX4O14627 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.12■□□□□ 0.81
CDX4O14627 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX4O14627 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.11■□□□□ 0.81
CDX4O14627 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CDX4O14627 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.11■□□□□ 0.81
CDX4O14627 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.11■□□□□ 0.81
CDX4O14627 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.11■□□□□ 0.81
CDX4O14627 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.11■□□□□ 0.81
CDX4O14627 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.11■□□□□ 0.81
CDX4O14627 AC006557.6-201ENST00000623071 864 ntBASIC20.11■□□□□ 0.81
CDX4O14627 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.11■□□□□ 0.81
CDX4O14627 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX4O14627 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CDX4O14627 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 AC005829.2-201ENST00000571422 1056 ntBASIC20.1■□□□□ 0.81
CDX4O14627 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.1■□□□□ 0.81
CDX4O14627 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 AC093323.1-202ENST00000635031 2045 ntBASIC20.1■□□□□ 0.81
CDX4O14627 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX4O14627 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CDX4O14627 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CDX4O14627 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 AC092053.2-201ENST00000640557 1818 ntBASIC20.09■□□□□ 0.81
CDX4O14627 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CDX4O14627 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.09■□□□□ 0.81
CDX4O14627 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.09■□□□□ 0.81
CDX4O14627 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.09■□□□□ 0.81
CDX4O14627 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CDX4O14627 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CDX4O14627 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX4O14627 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms