Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 AP004607.4-201ENST00000530158 1459 ntBASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 AP005212.1-201ENST00000581547 1997 ntBASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 AL358852.1-201ENST00000623174 1268 ntBASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CPSF4LA6NMK7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CPSF4LA6NMK7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 GABARAPL3-202ENST00000624044 1851 ntBASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 AC079140.4-201ENST00000507448 529 ntBASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPSF4LA6NMK7 AC007225.1-201ENST00000566331 1836 ntBASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CPSF4LA6NMK7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CPSF4LA6NMK7 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CPSF4LA6NMK7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.02■□□□□ 0.63
CPSF4LA6NMK7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CPSF4LA6NMK7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 AC105265.2-201ENST00000467189 838 ntBASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 AC027702.1-201ENST00000563810 1770 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms