Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 ABHD17AP1-201ENST00000358206 933 ntBASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 CYP21A1P-202ENST00000354927 1481 ntBASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC22.27■■□□□ 1.16
SMIM28A0A1B0GU29 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 KRT18P68-201ENST00000392293 1000 ntBASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
SMIM28A0A1B0GU29 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 TSPY20P-201ENST00000450910 630 ntBASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 MIR4651-201ENST00000582622 73 ntBASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMIM28A0A1B0GU29 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.24■■□□□ 1.15
SMIM28A0A1B0GU29 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 RNA5SP413-201ENST00000516373 109 ntBASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 AL589743.5-201ENST00000616611 1050 ntBASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.23■■□□□ 1.15
SMIM28A0A1B0GU29 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 AL024507.2-201ENST00000606070 2574 ntBASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms