Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 MIR6089-201ENST00000616698 64 ntBASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 ALDH1A3-203ENST00000557963 1670 ntBASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CDC42SE1Q9NRR8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 AP005212.1-201ENST00000581547 1997 ntBASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC10.74□□□□□ -0.69
CDC42SE1Q9NRR8 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
CDC42SE1Q9NRR8 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CDC42SE1Q9NRR8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC10.72□□□□□ -0.69
CDC42SE1Q9NRR8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
CDC42SE1Q9NRR8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms