Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 AL049796.1-201ENST00000565336 1766 ntBASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP1AQ9HD42 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 AP006587.3-201ENST00000525742 1516 ntBASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 AC131281.2-201ENST00000520478 145 ntBASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CHMP1AQ9HD42 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP1AQ9HD42 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP1AQ9HD42 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP1AQ9HD42 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms