Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.55■■□□□ 1.2
CDT1Q9H211 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 MIPEPP3-201ENST00000412105 444 ntBASIC22.55■■□□□ 1.2
CDT1Q9H211 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CDT1Q9H211 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.55■■□□□ 1.2
CDT1Q9H211 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CDT1Q9H211 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.55■■□□□ 1.2
CDT1Q9H211 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CDT1Q9H211 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.55■■□□□ 1.2
CDT1Q9H211 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CDT1Q9H211 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.54■■□□□ 1.2
CDT1Q9H211 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CDT1Q9H211 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.54■■□□□ 1.2
CDT1Q9H211 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.54■■□□□ 1.2
CDT1Q9H211 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CDT1Q9H211 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDT1Q9H211 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CDT1Q9H211 AC116050.2-201ENST00000612102 1779 ntBASIC22.53■■□□□ 1.2
CDT1Q9H211 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.53■■□□□ 1.2
CDT1Q9H211 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CDT1Q9H211 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CDT1Q9H211 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.53■■□□□ 1.2
CDT1Q9H211 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.53■■□□□ 1.2
CDT1Q9H211 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.53■■□□□ 1.2
CDT1Q9H211 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CDT1Q9H211 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CDT1Q9H211 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CDT1Q9H211 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
CDT1Q9H211 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CDT1Q9H211 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.52■■□□□ 1.2
CDT1Q9H211 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CDT1Q9H211 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.52■■□□□ 1.2
CDT1Q9H211 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CDT1Q9H211 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.51■■□□□ 1.19
CDT1Q9H211 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 BX276092.2-201ENST00000417668 665 ntBASIC22.51■■□□□ 1.19
CDT1Q9H211 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC22.51■■□□□ 1.19
CDT1Q9H211 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.51■■□□□ 1.19
CDT1Q9H211 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.51■■□□□ 1.19
CDT1Q9H211 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
CDT1Q9H211 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDT1Q9H211 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.51■■□□□ 1.19
CDT1Q9H211 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.51■■□□□ 1.19
CDT1Q9H211 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.51■■□□□ 1.19
CDT1Q9H211 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CDT1Q9H211 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
CDT1Q9H211 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDT1Q9H211 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CDT1Q9H211 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDT1Q9H211 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDT1Q9H211 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CDT1Q9H211 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.5■■□□□ 1.19
CDT1Q9H211 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CDT1Q9H211 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.5■■□□□ 1.19
CDT1Q9H211 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.5■■□□□ 1.19
CDT1Q9H211 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.5■■□□□ 1.19
CDT1Q9H211 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC22.5■■□□□ 1.19
CDT1Q9H211 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDT1Q9H211 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CDT1Q9H211 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CDT1Q9H211 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
CDT1Q9H211 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 AL355472.2-201ENST00000422958 438 ntBASIC22.49■■□□□ 1.19
CDT1Q9H211 AC069152.1-201ENST00000438030 544 ntBASIC22.49■■□□□ 1.19
CDT1Q9H211 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.49■■□□□ 1.19
CDT1Q9H211 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.49■■□□□ 1.19
CDT1Q9H211 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDT1Q9H211 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CDT1Q9H211 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CDT1Q9H211 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.48■■□□□ 1.19
CDT1Q9H211 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CDT1Q9H211 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms