Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS35Q96QK1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS35Q96QK1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS35Q96QK1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 FEM1AP4-201ENST00000443167 1987 ntBASIC20.58■□□□□ 0.89
VPS35Q96QK1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS35Q96QK1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS35Q96QK1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VPS35Q96QK1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
VPS35Q96QK1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS35Q96QK1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS35Q96QK1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS35Q96QK1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS35Q96QK1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS35Q96QK1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS35Q96QK1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS35Q96QK1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 AC068338.2-201ENST00000563278 1430 ntBASIC20.57■□□□□ 0.88
VPS35Q96QK1 AL591742.1-201ENST00000604433 565 ntBASIC20.57■□□□□ 0.88
VPS35Q96QK1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS35Q96QK1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS35Q96QK1 AL049796.1-201ENST00000565336 1766 ntBASIC20.57■□□□□ 0.88
VPS35Q96QK1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 AC026310.3-201ENST00000625186 2373 ntBASIC20.56■□□□□ 0.88
VPS35Q96QK1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS35Q96QK1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS35Q96QK1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS35Q96QK1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS35Q96QK1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS35Q96QK1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS35Q96QK1 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS35Q96QK1 AC090192.1-201ENST00000517740 490 ntBASIC20.55■□□□□ 0.88
VPS35Q96QK1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS35Q96QK1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS35Q96QK1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS35Q96QK1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS35Q96QK1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.54■□□□□ 0.88
VPS35Q96QK1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CROCCP5-201ENST00000436658 830 ntBASIC20.54■□□□□ 0.88
VPS35Q96QK1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 AC005181.1-201ENST00000604782 1256 ntBASIC20.54■□□□□ 0.88
VPS35Q96QK1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS35Q96QK1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS35Q96QK1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms