Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 AC104564.3-201ENST00000582367 638 ntBASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 CR559946.2-201ENST00000623684 991 ntBASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 AC027702.1-201ENST00000563810 1770 ntBASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN3Q8NCR9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 AC025884.2-201ENST00000553429 711 ntBASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 AC079598.2-202ENST00000546624 1451 ntBASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN3Q8NCR9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN3Q8NCR9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.52■□□□□ 0.23
CLRN3Q8NCR9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 HLA-V-202ENST00000446817 847 ntBASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 AC016575.1-201ENST00000607026 382 ntBASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 AC020907.5-201ENST00000624372 1936 ntBASIC16.51■□□□□ 0.23
CLRN3Q8NCR9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms