Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 CYP2T1P-201ENST00000432607 1285 ntBASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 GCSHP5-201ENST00000443090 522 ntBASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 AC010141.2-201ENST00000452426 721 ntBASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SH3RF1Q7Z6J0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
SH3RF1Q7Z6J0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 AC093787.1-201ENST00000450396 207 ntBASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 AC013268.1-206ENST00000638368 961 ntBASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 AC112229.1-201ENST00000639295 961 ntBASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 AP006294.2-201ENST00000641667 209 ntBASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SH3RF1Q7Z6J0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.77■■□□□ 1.39
SH3RF1Q7Z6J0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 TERF1P5-201ENST00000477545 1207 ntBASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 KRT18P20-201ENST00000548986 1279 ntBASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 AC138907.5-202ENST00000569484 235 ntBASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 AC083880.1-201ENST00000608266 535 ntBASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SH3RF1Q7Z6J0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 ESRRAP1-201ENST00000400596 1257 ntBASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
SH3RF1Q7Z6J0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms