Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CTR9Q6PD62 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
CTR9Q6PD62 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTR9Q6PD62 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTR9Q6PD62 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 FAM21FP-204ENST00000608637 956 ntBASIC24.67■■□□□ 1.54
CTR9Q6PD62 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTR9Q6PD62 AC010980.2-201ENST00000587099 1412 ntBASIC24.67■■□□□ 1.54
CTR9Q6PD62 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTR9Q6PD62 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTR9Q6PD62 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
CTR9Q6PD62 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTR9Q6PD62 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTR9Q6PD62 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 MIPEPP3-201ENST00000412105 444 ntBASIC24.66■■□□□ 1.54
CTR9Q6PD62 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTR9Q6PD62 AC098934.4-201ENST00000564127 592 ntBASIC24.66■■□□□ 1.54
CTR9Q6PD62 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTR9Q6PD62 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.66■■□□□ 1.54
CTR9Q6PD62 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CTR9Q6PD62 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC24.65■■□□□ 1.54
CTR9Q6PD62 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.65■■□□□ 1.54
CTR9Q6PD62 LINC00565-201ENST00000562710 2331 ntBASIC24.65■■□□□ 1.54
CTR9Q6PD62 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.65■■□□□ 1.54
CTR9Q6PD62 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTR9Q6PD62 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTR9Q6PD62 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CTR9Q6PD62 CDV3P1-201ENST00000471403 739 ntBASIC24.64■■□□□ 1.54
CTR9Q6PD62 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.64■■□□□ 1.54
CTR9Q6PD62 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC24.64■■□□□ 1.54
CTR9Q6PD62 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC24.63■■□□□ 1.53
CTR9Q6PD62 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.63■■□□□ 1.53
CTR9Q6PD62 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CTR9Q6PD62 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTR9Q6PD62 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTR9Q6PD62 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTR9Q6PD62 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CTR9Q6PD62 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.62■■□□□ 1.53
CTR9Q6PD62 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTR9Q6PD62 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CTR9Q6PD62 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 AC007322.3-201ENST00000426526 701 ntBASIC24.61■■□□□ 1.53
CTR9Q6PD62 AC069152.1-201ENST00000438030 544 ntBASIC24.61■■□□□ 1.53
CTR9Q6PD62 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 AL024507.2-201ENST00000606070 2574 ntBASIC24.61■■□□□ 1.53
CTR9Q6PD62 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTR9Q6PD62 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
CTR9Q6PD62 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms