Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 OR2I1P-207ENST00000453522 948 ntBASIC17.1■□□□□ 0.33
HOXA1P49639 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
HOXA1P49639 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA1P49639 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA1P49639 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA1P49639 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA1P49639 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA1P49639 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA1P49639 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA1P49639 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA1P49639 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA1P49639 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA1P49639 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA1P49639 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.08■□□□□ 0.33
HOXA1P49639 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA1P49639 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA1P49639 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXA1P49639 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA1P49639 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA1P49639 SRD5A1P1-201ENST00000442297 786 ntBASIC17.08■□□□□ 0.32
HOXA1P49639 AC010141.3-201ENST00000456659 717 ntBASIC17.08■□□□□ 0.32
HOXA1P49639 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXA1P49639 MIR3181-201ENST00000578512 73 ntBASIC17.08■□□□□ 0.32
HOXA1P49639 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXA1P49639 AC092171.4-201ENST00000609130 632 ntBASIC17.08■□□□□ 0.32
HOXA1P49639 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA1P49639 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.08■□□□□ 0.32
HOXA1P49639 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXA1P49639 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA1P49639 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA1P49639 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXA1P49639 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXA1P49639 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.07■□□□□ 0.32
HOXA1P49639 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HOXA1P49639 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
HOXA1P49639 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 LTB4R2-202ENST00000528054 3092 ntBASIC17.07■□□□□ 0.32
HOXA1P49639 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA1P49639 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA1P49639 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA1P49639 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA1P49639 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 AL034346.1-201ENST00000568244 1277 ntBASIC17.06■□□□□ 0.32
HOXA1P49639 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA1P49639 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA1P49639 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
HOXA1P49639 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA1P49639 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA1P49639 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms