Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RPA3P35244 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RPA3P35244 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RPA3P35244 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.92■□□□□ 0.94
RPA3P35244 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.92■□□□□ 0.94
RPA3P35244 IRS3P-201ENST00000223076 1006 ntBASIC20.92■□□□□ 0.94
RPA3P35244 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.92■□□□□ 0.94
RPA3P35244 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.92■□□□□ 0.94
RPA3P35244 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RPA3P35244 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.92■□□□□ 0.94
RPA3P35244 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RPA3P35244 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
RPA3P35244 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RPA3P35244 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RPA3P35244 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RPA3P35244 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RPA3P35244 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RPA3P35244 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.91■□□□□ 0.94
RPA3P35244 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.91■□□□□ 0.94
RPA3P35244 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.91■□□□□ 0.94
RPA3P35244 AC019069.1-201ENST00000610008 1333 ntBASIC20.91■□□□□ 0.94
RPA3P35244 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RPA3P35244 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 AP006587.3-201ENST00000525742 1516 ntBASIC20.9■□□□□ 0.94
RPA3P35244 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RPA3P35244 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RPA3P35244 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.9■□□□□ 0.94
RPA3P35244 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RPA3P35244 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
RPA3P35244 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
RPA3P35244 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RPA3P35244 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RPA3P35244 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
RPA3P35244 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.89■□□□□ 0.94
RPA3P35244 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RPA3P35244 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
RPA3P35244 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.89■□□□□ 0.93
RPA3P35244 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.89■□□□□ 0.93
RPA3P35244 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.89■□□□□ 0.93
RPA3P35244 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RPA3P35244 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RPA3P35244 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RPA3P35244 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
RPA3P35244 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.88■□□□□ 0.93
RPA3P35244 ZNRF2P3-201ENST00000424200 374 ntBASIC20.88■□□□□ 0.93
RPA3P35244 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 SMUG1P1-201ENST00000590640 811 ntBASIC20.88■□□□□ 0.93
RPA3P35244 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.88■□□□□ 0.93
RPA3P35244 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
RPA3P35244 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RPA3P35244 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
RPA3P35244 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 AC121338.2-201ENST00000622535 1744 ntBASIC20.87■□□□□ 0.93
RPA3P35244 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.87■□□□□ 0.93
RPA3P35244 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.87■□□□□ 0.93
RPA3P35244 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.87■□□□□ 0.93
RPA3P35244 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.87■□□□□ 0.93
RPA3P35244 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPA3P35244 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms