Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS4P0CW20 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMS4P0CW20 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMS4P0CW20 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMS4P0CW20 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 AC055733.4-201ENST00000638462 1354 ntBASIC18.41■□□□□ 0.54
LIMS4P0CW20 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.41■□□□□ 0.54
LIMS4P0CW20 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMS4P0CW20 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LIMS4P0CW20 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMS4P0CW20 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIMS4P0CW20 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMS4P0CW20 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMS4P0CW20 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMS4P0CW20 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 AC011484.1-201ENST00000377652 1995 ntBASIC18.39■□□□□ 0.53
LIMS4P0CW20 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 DUX4L19-201ENST00000557448 1267 ntBASIC18.39■□□□□ 0.53
LIMS4P0CW20 AC133561.4-201ENST00000566112 224 ntBASIC18.39■□□□□ 0.53
LIMS4P0CW20 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMS4P0CW20 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LIMS4P0CW20 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 AC087289.5-201ENST00000586076 3175 ntBASIC18.38■□□□□ 0.53
LIMS4P0CW20 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMS4P0CW20 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMS4P0CW20 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMS4P0CW20 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMS4P0CW20 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMS4P0CW20 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMS4P0CW20 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms