Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 RPS30BYOR182C 192 nt1.66□□□□□ -2.14
RPL40BP0CH09 YPR078CYPR078C 1119 nt1.66□□□□□ -2.14
RPL40BP0CH09 MDM20YOL076W 2391 nt1.66□□□□□ -2.14
RPL40BP0CH09 YHR214C-BYHR214C-B 5382 nt1.66□□□□□ -2.14
RPL40BP0CH09 MRPL9YGR220C 810 nt1.65□□□□□ -2.15
RPL40BP0CH09 PEX21YGR239C 867 nt1.65□□□□□ -2.15
RPL40BP0CH09 COA6YMR244C-A 315 nt1.65□□□□□ -2.15
RPL40BP0CH09 RPC40YPR110C 1008 nt1.65□□□□□ -2.15
RPL40BP0CH09 YCR013CYCR013C 648 nt1.64□□□□□ -2.15
RPL40BP0CH09 TPT1YOL102C 693 nt1.64□□□□□ -2.15
RPL40BP0CH09 APD1YBR151W 951 nt1.64□□□□□ -2.15
RPL40BP0CH09 RRI1YDL216C 1323 nt1.64□□□□□ -2.15
RPL40BP0CH09 YNL018CYNL018C 1839 nt1.63□□□□□ -2.15
RPL40BP0CH09 PKP2YGL059W 1476 nt1.63□□□□□ -2.15
RPL40BP0CH09 YHL012WYHL012W 1482 nt1.63□□□□□ -2.15
RPL40BP0CH09 RTP1YMR185W 2946 nt1.63□□□□□ -2.15
RPL40BP0CH09 YHR097CYHR097C 1101 nt1.63□□□□□ -2.15
RPL40BP0CH09 SEC28YIL076W 891 nt1.63□□□□□ -2.15
RPL40BP0CH09 MCR1YKL150W 909 nt1.63□□□□□ -2.15
RPL40BP0CH09 BOS1YLR078C 735 nt1.63□□□□□ -2.15
RPL40BP0CH09 YLR400WYLR400W 474 nt1.63□□□□□ -2.15
RPL40BP0CH09 YMR306C-AYMR306C-A 390 nt1.63□□□□□ -2.15
RPL40BP0CH09 YNL035CYNL035C 1170 nt1.63□□□□□ -2.15
RPL40BP0CH09 YNL067W-AYNL067W-A 147 nt1.63□□□□□ -2.15
RPL40BP0CH09 HMS1YOR032C 1305 nt1.63□□□□□ -2.15
RPL40BP0CH09 MMS22YLR320W 4365 nt1.62□□□□□ -2.15
RPL40BP0CH09 MRPL6YHR147C 645 nt1.62□□□□□ -2.15
RPL40BP0CH09 PFK27YOL136C 1194 nt1.62□□□□□ -2.15
RPL40BP0CH09 LRE1YCL051W 1752 nt1.62□□□□□ -2.15
RPL40BP0CH09 MON1YGL124C 1935 nt1.62□□□□□ -2.15
RPL40BP0CH09 YDR179W-AYDR179W-A 1392 nt1.61□□□□□ -2.15
RPL40BP0CH09 VPS54YDR027C 2670 nt1.61□□□□□ -2.15
RPL40BP0CH09 CTF18YMR078C 2226 nt1.61□□□□□ -2.15
RPL40BP0CH09 SNO3YFL060C 669 nt1.61□□□□□ -2.15
RPL40BP0CH09 YGL117WYGL117W 798 nt1.61□□□□□ -2.15
RPL40BP0CH09 TFA2YKR062W 987 nt1.61□□□□□ -2.15
RPL40BP0CH09 PDP3YLR455W 915 nt1.61□□□□□ -2.15
RPL40BP0CH09 SNO2YNL334C 669 nt1.61□□□□□ -2.15
RPL40BP0CH09 UBR1YGR184C 5853 nt1.61□□□□□ -2.15
RPL40BP0CH09 SNU114YKL173W 3027 nt1.61□□□□□ -2.15
RPL40BP0CH09 CFT1YDR301W 4074 nt1.6□□□□□ -2.15
RPL40BP0CH09 CBS2YDR197W 1170 nt1.6□□□□□ -2.15
RPL40BP0CH09 YGR149WYGR149W 1299 nt1.6□□□□□ -2.15
RPL40BP0CH09 PPE1YHR075C 1203 nt1.6□□□□□ -2.15
RPL40BP0CH09 YIL068W-AYIL068W-A 384 nt1.6□□□□□ -2.15
RPL40BP0CH09 MSL1YIR009W 336 nt1.6□□□□□ -2.15
RPL40BP0CH09 EBP2YKL172W 1284 nt1.6□□□□□ -2.15
RPL40BP0CH09 YML094C-AYML094C-A 402 nt1.6□□□□□ -2.15
RPL40BP0CH09 EAF7YNL136W 1278 nt1.6□□□□□ -2.15
RPL40BP0CH09 ARR2YPR200C 393 nt1.6□□□□□ -2.15
RPL40BP0CH09 PCK1YKR097W 1650 nt1.6□□□□□ -2.15
RPL40BP0CH09 IRC3YDR332W 2070 nt1.6□□□□□ -2.15
RPL40BP0CH09 CAT8YMR280C 4302 nt1.59□□□□□ -2.15
RPL40BP0CH09 TDA9YML081W 3756 nt1.59□□□□□ -2.15
RPL40BP0CH09 MSS2YDL107W 1056 nt1.59□□□□□ -2.15
RPL40BP0CH09 YGR050CYGR050C 357 nt1.59□□□□□ -2.15
RPL40BP0CH09 YLR290CYLR290C 834 nt1.59□□□□□ -2.15
RPL40BP0CH09 UTP21YLR409C 2820 nt1.59□□□□□ -2.16
RPL40BP0CH09 IRC10YOL015W 1761 nt1.59□□□□□ -2.16
RPL40BP0CH09 BRR2YER172C 6492 nt1.58□□□□□ -2.16
RPL40BP0CH09 STN1YDR082W 1485 nt1.58□□□□□ -2.16
RPL40BP0CH09 MDM10YAL010C 1482 nt1.58□□□□□ -2.16
RPL40BP0CH09 YLR108CYLR108C 1458 nt1.58□□□□□ -2.16
RPL40BP0CH09 YNL284C-BYNL284C-B 5268 nt1.58□□□□□ -2.16
RPL40BP0CH09 RSR1YGR152C 819 nt1.58□□□□□ -2.16
RPL40BP0CH09 YLR444CYLR444C 303 nt1.58□□□□□ -2.16
RPL40BP0CH09 YML003WYML003W 873 nt1.58□□□□□ -2.16
RPL40BP0CH09 AIM41YOR215C 558 nt1.58□□□□□ -2.16
RPL40BP0CH09 YAR009CYAR009C 3591 nt1.58□□□□□ -2.16
RPL40BP0CH09 VPS34YLR240W 2628 nt1.58□□□□□ -2.16
RPL40BP0CH09 tF(GAA)BtF(GAA)B 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)FtF(GAA)F 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)GtF(GAA)G 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)H1tF(GAA)H1 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)H2tF(GAA)H2 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)MtF(GAA)M 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)P1tF(GAA)P1 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 tF(GAA)P2tF(GAA)P2 73 nt1.57□□□□□ -2.16
RPL40BP0CH09 YER121WYER121W 345 nt1.57□□□□□ -2.16
RPL40BP0CH09 YGR064WYGR064W 369 nt1.57□□□□□ -2.16
RPL40BP0CH09 YGR114CYGR114C 390 nt1.57□□□□□ -2.16
RPL40BP0CH09 CSE4YKL049C 690 nt1.57□□□□□ -2.16
RPL40BP0CH09 REX3YLR107W 1215 nt1.57□□□□□ -2.16
RPL40BP0CH09 RDN58-1RDN58-1 158 nt1.57□□□□□ -2.16
RPL40BP0CH09 RDN58-2RDN58-2 158 nt1.57□□□□□ -2.16
RPL40BP0CH09 YMR320WYMR320W 306 nt1.57□□□□□ -2.16
RPL40BP0CH09 SSP2YOR242C 1116 nt1.57□□□□□ -2.16
RPL40BP0CH09 ECM5YMR176W 4236 nt1.57□□□□□ -2.16
RPL40BP0CH09 HOS4YIL112W 3252 nt1.57□□□□□ -2.16
RPL40BP0CH09 RRP14YKL082C 1305 nt1.57□□□□□ -2.16
RPL40BP0CH09 IRE1YHR079C 3348 nt1.56□□□□□ -2.16
RPL40BP0CH09 LAA1YJL207C 6045 nt1.56□□□□□ -2.16
RPL40BP0CH09 PIK1YNL267W 3201 nt1.56□□□□□ -2.16
RPL40BP0CH09 PSP1YDR505C 2526 nt1.56□□□□□ -2.16
RPL40BP0CH09 TVP15YDR100W 432 nt1.56□□□□□ -2.16
RPL40BP0CH09 TIM11YDR322C-A 291 nt1.56□□□□□ -2.16
RPL40BP0CH09 MMS2YGL087C 414 nt1.56□□□□□ -2.16
RPL40BP0CH09 YGR226CYGR226C 210 nt1.56□□□□□ -2.16
RPL40BP0CH09 YIL089WYIL089W 618 nt1.56□□□□□ -2.16
RPL40BP0CH09 INA22YIR024C 651 nt1.56□□□□□ -2.16
Retrieved 100 of 7,029 protein–RNA pairs in 26.7 ms