Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.93■□□□□ 0.78
LDLRP01130 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.93■□□□□ 0.78
LDLRP01130 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LDLRP01130 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.92■□□□□ 0.78
LDLRP01130 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.92■□□□□ 0.78
LDLRP01130 AC016769.1-201ENST00000409132 1010 ntBASIC19.92■□□□□ 0.78
LDLRP01130 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.92■□□□□ 0.78
LDLRP01130 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.92■□□□□ 0.78
LDLRP01130 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
LDLRP01130 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LDLRP01130 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDLRP01130 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.91■□□□□ 0.78
LDLRP01130 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.91■□□□□ 0.78
LDLRP01130 AC026185.1-201ENST00000445748 174 ntBASIC19.91■□□□□ 0.78
LDLRP01130 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
LDLRP01130 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.91■□□□□ 0.78
LDLRP01130 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.91■□□□□ 0.78
LDLRP01130 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDLRP01130 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.91■□□□□ 0.78
LDLRP01130 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.91■□□□□ 0.78
LDLRP01130 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LDLRP01130 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.9■□□□□ 0.78
LDLRP01130 AC079089.2-201ENST00000531211 1277 ntBASIC19.9■□□□□ 0.78
LDLRP01130 AC137761.2-201ENST00000561729 223 ntBASIC19.9■□□□□ 0.78
LDLRP01130 AC145350.3-201ENST00000569033 163 ntBASIC19.9■□□□□ 0.78
LDLRP01130 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.9■□□□□ 0.78
LDLRP01130 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.9■□□□□ 0.78
LDLRP01130 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LDLRP01130 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.9■□□□□ 0.78
LDLRP01130 AL049796.1-201ENST00000565336 1766 ntBASIC19.9■□□□□ 0.78
LDLRP01130 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.9■□□□□ 0.78
LDLRP01130 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LDLRP01130 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.89■□□□□ 0.77
LDLRP01130 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LDLRP01130 AL355802.2-201ENST00000402069 882 ntBASIC19.89■□□□□ 0.77
LDLRP01130 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.89■□□□□ 0.77
LDLRP01130 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
LDLRP01130 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LDLRP01130 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.89■□□□□ 0.77
LDLRP01130 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LDLRP01130 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.89■□□□□ 0.77
LDLRP01130 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
LDLRP01130 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.89■□□□□ 0.77
LDLRP01130 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.89■□□□□ 0.77
LDLRP01130 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.89■□□□□ 0.77
LDLRP01130 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LDLRP01130 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.88■□□□□ 0.77
LDLRP01130 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.88■□□□□ 0.77
LDLRP01130 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
LDLRP01130 AC007952.6-201ENST00000573168 2673 ntBASIC19.88■□□□□ 0.77
LDLRP01130 AC003957.1-201ENST00000625108 2673 ntBASIC19.88■□□□□ 0.77
LDLRP01130 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms