Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX2-2O95096 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 AC091799.1-201ENST00000422823 811 ntBASIC19.16■□□□□ 0.66
NKX2-2O95096 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
NKX2-2O95096 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
NKX2-2O95096 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.16■□□□□ 0.66
NKX2-2O95096 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.16■□□□□ 0.66
NKX2-2O95096 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX2-2O95096 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
NKX2-2O95096 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
NKX2-2O95096 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-2O95096 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
NKX2-2O95096 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.15■□□□□ 0.66
NKX2-2O95096 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
NKX2-2O95096 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-2O95096 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.15■□□□□ 0.66
NKX2-2O95096 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
NKX2-2O95096 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
NKX2-2O95096 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX2-2O95096 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.14■□□□□ 0.66
NKX2-2O95096 AC116050.2-201ENST00000612102 1779 ntBASIC19.14■□□□□ 0.66
NKX2-2O95096 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NKX2-2O95096 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
NKX2-2O95096 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.14■□□□□ 0.65
NKX2-2O95096 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.14■□□□□ 0.65
NKX2-2O95096 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NKX2-2O95096 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
NKX2-2O95096 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.13■□□□□ 0.65
NKX2-2O95096 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX2-2O95096 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.13■□□□□ 0.65
NKX2-2O95096 AC006015.1-201ENST00000429970 570 ntBASIC19.13■□□□□ 0.65
NKX2-2O95096 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX2-2O95096 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX2-2O95096 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
NKX2-2O95096 AC010536.3-201ENST00000620306 533 ntBASIC19.13■□□□□ 0.65
NKX2-2O95096 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
NKX2-2O95096 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NKX2-2O95096 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX2-2O95096 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX2-2O95096 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.12■□□□□ 0.65
NKX2-2O95096 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
NKX2-2O95096 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.12■□□□□ 0.65
NKX2-2O95096 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
NKX2-2O95096 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
NKX2-2O95096 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX2-2O95096 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
NKX2-2O95096 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.11■□□□□ 0.65
NKX2-2O95096 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms