Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SDC3O75056 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.31■□□□□ 0.84
SDC3O75056 MCRIP2P1-201ENST00000394346 511 ntBASIC20.31■□□□□ 0.84
SDC3O75056 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.31■□□□□ 0.84
SDC3O75056 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.31■□□□□ 0.84
SDC3O75056 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.31■□□□□ 0.84
SDC3O75056 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SDC3O75056 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SDC3O75056 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SDC3O75056 AC100791.3-201ENST00000617619 330 ntBASIC20.31■□□□□ 0.84
SDC3O75056 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.31■□□□□ 0.84
SDC3O75056 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SDC3O75056 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.3■□□□□ 0.84
SDC3O75056 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SDC3O75056 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 AC007322.3-201ENST00000426526 701 ntBASIC20.3■□□□□ 0.84
SDC3O75056 AC060766.5-201ENST00000590539 871 ntBASIC20.3■□□□□ 0.84
SDC3O75056 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SDC3O75056 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.3■□□□□ 0.84
SDC3O75056 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDC3O75056 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.3■□□□□ 0.84
SDC3O75056 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.29■□□□□ 0.84
SDC3O75056 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.29■□□□□ 0.84
SDC3O75056 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.29■□□□□ 0.84
SDC3O75056 UNC93B4-201ENST00000505679 747 ntBASIC20.29■□□□□ 0.84
SDC3O75056 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SDC3O75056 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.29■□□□□ 0.84
SDC3O75056 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDC3O75056 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDC3O75056 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDC3O75056 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.28■□□□□ 0.84
SDC3O75056 KRT18P68-201ENST00000392293 1000 ntBASIC20.28■□□□□ 0.84
SDC3O75056 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
SDC3O75056 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.28■□□□□ 0.84
SDC3O75056 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.28■□□□□ 0.84
SDC3O75056 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.28■□□□□ 0.84
SDC3O75056 AC008403.3-201ENST00000598924 454 ntBASIC20.28■□□□□ 0.84
SDC3O75056 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SDC3O75056 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.28■□□□□ 0.84
SDC3O75056 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDC3O75056 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.28■□□□□ 0.84
SDC3O75056 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.28■□□□□ 0.84
SDC3O75056 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.28■□□□□ 0.84
SDC3O75056 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SDC3O75056 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.27■□□□□ 0.84
SDC3O75056 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.27■□□□□ 0.84
SDC3O75056 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.27■□□□□ 0.84
SDC3O75056 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SDC3O75056 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.27■□□□□ 0.84
SDC3O75056 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.27■□□□□ 0.84
SDC3O75056 HLA-B-256ENST00000639848 1089 ntBASIC20.27■□□□□ 0.84
SDC3O75056 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SDC3O75056 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDC3O75056 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SDC3O75056 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDC3O75056 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 AC092368.3-202ENST00000574180 1591 ntBASIC20.26■□□□□ 0.83
SDC3O75056 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SDC3O75056 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.26■□□□□ 0.83
SDC3O75056 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.26■□□□□ 0.83
SDC3O75056 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
SDC3O75056 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.26■□□□□ 0.83
SDC3O75056 RPS2P4-201ENST00000476944 856 ntBASIC20.26■□□□□ 0.83
SDC3O75056 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms