Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 BX276092.2-201ENST00000417668 665 ntBASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 KRT18P6-201ENST00000555540 1265 ntBASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCF1Q9UBD9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 CD99P1-205ENST00000527459 561 ntBASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 AC133561.1-201ENST00000568600 2415 ntBASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLCF1Q9UBD9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCF1Q9UBD9 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 AC007322.3-201ENST00000426526 701 ntBASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 AC100791.3-201ENST00000617619 330 ntBASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCF1Q9UBD9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCF1Q9UBD9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 MYC-209ENST00000641252 345 ntBASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms