Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 AC092171.4-201ENST00000609130 632 ntBASIC18.92■□□□□ 0.62
CLN6Q9NWW5 AC007225.1-201ENST00000566331 1836 ntBASIC18.92■□□□□ 0.62
CLN6Q9NWW5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.92■□□□□ 0.62
CLN6Q9NWW5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.91■□□□□ 0.62
CLN6Q9NWW5 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.91■□□□□ 0.62
CLN6Q9NWW5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 AP006587.3-201ENST00000525742 1516 ntBASIC18.9■□□□□ 0.62
CLN6Q9NWW5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
CLN6Q9NWW5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CLN6Q9NWW5 AC138932.1-201ENST00000534164 6830 ntBASIC18.89■□□□□ 0.61
CLN6Q9NWW5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLN6Q9NWW5 SRD5A1P1-201ENST00000442297 786 ntBASIC18.89■□□□□ 0.61
CLN6Q9NWW5 MIR3621-201ENST00000580529 85 ntBASIC18.89■□□□□ 0.61
CLN6Q9NWW5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLN6Q9NWW5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
CLN6Q9NWW5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 AC010525.1-201ENST00000585559 441 ntBASIC18.88■□□□□ 0.61
CLN6Q9NWW5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.88■□□□□ 0.61
CLN6Q9NWW5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLN6Q9NWW5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms