Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 OR7E47P-201ENST00000546390 1422 ntBASIC18.9■□□□□ 0.62
DDX28Q9NUL7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
DDX28Q9NUL7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
DDX28Q9NUL7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 AP005435.1-201ENST00000529293 1178 ntBASIC18.89■□□□□ 0.61
DDX28Q9NUL7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
DDX28Q9NUL7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 SLC47A1P1-202ENST00000449666 945 ntBASIC18.88■□□□□ 0.61
DDX28Q9NUL7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 AC005837.3-201ENST00000612163 286 ntBASIC18.88■□□□□ 0.61
DDX28Q9NUL7 AC110285.6-201ENST00000617652 491 ntBASIC18.88■□□□□ 0.61
DDX28Q9NUL7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 OXCT2P1-201ENST00000447263 1535 ntBASIC18.88■□□□□ 0.61
DDX28Q9NUL7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.88■□□□□ 0.61
DDX28Q9NUL7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.87■□□□□ 0.61
DDX28Q9NUL7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DDX28Q9NUL7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms