Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
DDX4Q9NQI0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
DDX4Q9NQI0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC24.7■■□□□ 1.54
DDX4Q9NQI0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
DDX4Q9NQI0 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.7■■□□□ 1.54
DDX4Q9NQI0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 AC093827.2-201ENST00000512654 315 ntBASIC24.69■■□□□ 1.54
DDX4Q9NQI0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 AC006058.3-201ENST00000606217 1069 ntBASIC24.69■■□□□ 1.54
DDX4Q9NQI0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
DDX4Q9NQI0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX4Q9NQI0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 AC128676.1-201ENST00000454392 318 ntBASIC24.67■■□□□ 1.54
DDX4Q9NQI0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX4Q9NQI0 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 CYP21A1P-202ENST00000354927 1481 ntBASIC24.66■■□□□ 1.54
DDX4Q9NQI0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 KRT18P68-201ENST00000392293 1000 ntBASIC24.66■■□□□ 1.54
DDX4Q9NQI0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 GCSHP5-201ENST00000443090 522 ntBASIC24.66■■□□□ 1.54
DDX4Q9NQI0 AC026366.1-201ENST00000488803 879 ntBASIC24.66■■□□□ 1.54
DDX4Q9NQI0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.66■■□□□ 1.54
DDX4Q9NQI0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 AC008403.3-201ENST00000598924 454 ntBASIC24.65■■□□□ 1.54
DDX4Q9NQI0 AL589743.5-201ENST00000616611 1050 ntBASIC24.65■■□□□ 1.54
DDX4Q9NQI0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX4Q9NQI0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.64■■□□□ 1.54
DDX4Q9NQI0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 AP003097.1-201ENST00000530657 1135 ntBASIC24.64■■□□□ 1.54
DDX4Q9NQI0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.64■■□□□ 1.54
DDX4Q9NQI0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms