Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 AC083880.1-201ENST00000608266 535 ntBASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KIAA1549Q9HCM3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
KIAA1549Q9HCM3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.64■□□□□ 0.58
KIAA1549Q9HCM3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.64■□□□□ 0.58
KIAA1549Q9HCM3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.64■□□□□ 0.58
KIAA1549Q9HCM3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 AF106564.1-201ENST00000607058 2553 ntBASIC18.64■□□□□ 0.57
KIAA1549Q9HCM3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KIAA1549Q9HCM3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 AC091799.1-201ENST00000422823 811 ntBASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 AC245052.3-201ENST00000450182 901 ntBASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
KIAA1549Q9HCM3 BX276092.2-201ENST00000417668 665 ntBASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 AL355472.2-201ENST00000422958 438 ntBASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 AC243732.1-201ENST00000612648 864 ntBASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 AC010980.2-201ENST00000587099 1412 ntBASIC18.61■□□□□ 0.57
KIAA1549Q9HCM3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 DUSP5P2-201ENST00000426873 1033 ntBASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 AC073210.2-201ENST00000430369 194 ntBASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 OR10C1-204ENST00000622521 1039 ntBASIC18.6■□□□□ 0.57
KIAA1549Q9HCM3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.59■□□□□ 0.57
KIAA1549Q9HCM3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms