Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 AC233263.1-201ENST00000578059 224 ntBASIC27.57■■■□□ 2
USHBP1Q8N6Y0 HLA-B-256ENST00000639848 1089 ntBASIC27.57■■■□□ 2
USHBP1Q8N6Y0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 KRT18P68-201ENST00000392293 1000 ntBASIC27.56■■■□□ 2
USHBP1Q8N6Y0 AC007322.3-201ENST00000426526 701 ntBASIC27.56■■■□□ 2
USHBP1Q8N6Y0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 RPS2P4-201ENST00000476944 856 ntBASIC27.56■■■□□ 2
USHBP1Q8N6Y0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
USHBP1Q8N6Y0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 PNMA6B-201ENST00000538162 1200 ntBASIC27.55■■■□□ 2
USHBP1Q8N6Y0 USP36-216ENST00000589424 970 ntTSL 5 BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 AL359736.2-201ENST00000621992 437 ntBASIC27.55■■■□□ 2
USHBP1Q8N6Y0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
USHBP1Q8N6Y0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
USHBP1Q8N6Y0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USHBP1Q8N6Y0 AC092368.3-202ENST00000574180 1591 ntBASIC27.52■■■□□ 2
USHBP1Q8N6Y0 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 CYP21A1P-202ENST00000354927 1481 ntBASIC27.52■■■□□ 2
USHBP1Q8N6Y0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC27.52■■■□□ 2
USHBP1Q8N6Y0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 SAPCD2P1-201ENST00000395413 1184 ntBASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 SLC29A4P2-201ENST00000504749 1089 ntBASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC27.51■■□□□ 1.99
USHBP1Q8N6Y0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms